Logo
stable

Quick start tutorial:

  • Mapping human lymph node cell types to 10X Visium with Cell2location

Common errors, using containers:

  • Common errors
  • Using docker image
  • Using singularity image

API:

  • Initial gene filtering
  • Reference signatures (NB regression)
  • Reference signatures (hard-coded, cell type hierarchy)
  • Cell2location: spatial mapping (scvi-tools/pyro)
  • Downstream Analysis Models
  • Plotting
  • General utils
  • Pyro and scvi-tools infrastructure classes
  • Statistical distribution classes

Nanostring WTA Tutorial (pymc3):

  • Installation of pymc3 version with GPU support
  • Running cell2location on NanostringWTA data
cell2location
  • »
  • Search

© Copyright 2022, Vitalii Kleshchevnikov, Artem Shmatko, Emma Dann, Artem Lomakin, Alexander Aivazidis, Bayraktar Lab. Revision 47c8d6dc.

Built with Sphinx using a theme provided by Read the Docs.
Read the Docs v: stable
Versions
latest
stable
Downloads
On Read the Docs
Project Home
Builds